Output

Member of the Technical Staff, Molecular Generation

Output$120K — $180K *
Pharmaceuticals & Biotech
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • PhD in computer science, machine learning, physics, mathematics, or related field with 2+ years of post-doctoral/industry experience or Bachelor's/Master's with 5+ years of hands-on experience.
  • Strong publication record in generative methods at top-tier venues (e.g., NeurIPS, ICML, ICLR).
  • Extensive hands-on experience designing, building, and training deep generative models.
  • Proficient in Python and PyTorch; experienced with distributed multi-GPU infrastructure.
  • Demonstrated ability to own the full research-to-training pipeline and ship models.
  • Able to write production-quality, maintainable code in shared codebases.

Responsibilities

  • Design and build generative architectures for molecular data across multiple modalities, such as small molecules and peptides.
  • Develop training approaches that learn from diverse biological signals to compose novel structures.
  • Create methods for controllable, targeted generation of molecules with specified properties.
  • Integrate biological reasoning from foundational models into the generative pipeline to guide molecule generation.
  • Own the complete training process, from experiment design to hyperparameter optimization and iterations.
  • Design evaluation frameworks to assess the biological meaningfulness and novelty of generated molecules.

Benefits

  • Encouragement of new ideas, creativity, and contrarian thinking.
  • Feedback-focused environment promoting constructive growth and high expectations from leadership.
  • Autonomy over day-to-day management; emphasis on milestone achievement.
  • Competitive salary and equity in a growing, well-funded startup.
  • Excellent medical, dental, and vision coverage.
Full Job Description
You will lead the design and development of Output's generative models, working across molecular modalities to build systems that produce novel, biologically grounded molecules. This role spans the full arc from research to trained model: you design architectures, develop training approaches, run experiments on distributed GPU clusters, and evaluate results. - You will design and build generative architectures for molecular data spanning multiple modalities, including small molecules, peptides, mini proteins and more - You will develop training approaches that learn from diverse biological signal, ensuring the model composes genuinely novel structures - You will build methods for controllable, targeted generation, enabling the model to produce molecules with specified biological properties while satisfying real-world chemical constraints - You will integrate biological reasoning from our foundation model into the generative pipeline, using learned biological representations to guide and condition generation - You will own training end-to-end: experiment design, distributed training on multi-GPU clusters, hyperparameter optimization, and iteration - You will design evaluation frameworks that go beyond statistical metrics to measure whether generated molecules are biologically meaningful, structurally valid, and genuinely novel About You - You have a PhD in computer science, machine learning, physics, mathematics, or a related field with 2+ years of post-doctoral or industry research experience, or a Bachelor's or Master's degree with 5+ years of hands-on research and engineering experience in generative modeling - You have a strong publication record in generative methods at top-tier venues (e.g., NeurIPS, ICML, ICLR) - You have extensive hands-on experience designing, building, and training deep generative models, including work on novel architectures, training objectives, or sampling methods - You are proficient in Python and PyTorch, and have experience training models on distributed multi-GPU infrastructure - You have demonstrated the ability to own the full research-to-training pipeline: you do not just design methods, you train and ship models - You write production-quality code that is well-tested and maintainable, and you are comfortable working in shared codebases with version control and code review - You are a rigorous experimentalist who designs evaluations carefully, tracks experiments systematically, and draws conclusions from data Bonus Points - You have experience applying generative models to molecular, chemical, or biological data - You have a background in chemistry, biology, computational biology, biophysics, or a related natural science - You have experience with multi-modal learning or cross-modality translation - You have experience with conditional or controllable generation methods - You have contributed to open-source machine learning projects What We Offer - We encourage new and different ideas, creativity and contrarian thinking - Healthy feedback focused environment to help you strive - leadership will have high expectations, regularly share constructive feedback, support you and help you grow, and welcome receiving feedback and ideas from you - You own your day-to-day management. What we care about is that we all hit our milestones - Competitive salary and equity in a growing, well-funded startup - Excellent medical, dental, and vision coverage

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