Insitro

Senior Manager, Imaging Machine Learning

Insitro$247K — $262K *
Pharmaceuticals & Biotech
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • Strong grounding in computer vision and machine learning fundamentals with practical application experience.
  • Demonstrated experience applying CV/ML techniques to pixel data for biological insights.
  • Working understanding of imaging principles and microscopy fundamentals, including related artifacts.
  • Hands-on experience with cellular imaging datasets (e.g., fluorescence/confocal microscopy).
  • At least 3 years of people management experience, including oversight of senior team members.
  • Proven track record in mentoring and developing technical talent.
  • Strong communication skills for effective cross-functional collaboration.

Responsibilities

  • Lead, mentor, and expand a high-performing team of machine learning scientists focused on in-vitro data.
  • Collaborate with laboratory leadership to structure and empower assay development efforts.
  • Ensure successful integration of developed assays into computational biology workflows.
  • Contribute to the product vision and support development of advanced imaging software methods.
  • Develop methodologies for assessing microscopy data quality prior to training models.
  • Stay updated on trends and literature to maintain industry-leading practices in assays.
  • Set strategic and tactical goals for the team, ensuring alignment with cross-functional stakeholders.

Benefits

  • 401(k) plan with employer matching contributions.
  • Comprehensive medical, dental, and vision coverage with mental health support.
  • Open and flexible vacation policy to promote work-life balance.
  • Paid parental leave of at least 16 weeks for birthing parents, and 10 weeks for new parents.
  • Quarterly budget for books and online courses for ongoing self-development.
  • Support for professional conference attendance relevant to career growth.
  • New hire stipend for setting up home office workspaces.
  • Monthly stipends for cell phone and internet services.
  • Free onsite baristas and daily lunch for hybrid and onsite employees.
  • Access to a free commuter bus network to the South San Francisco HQ.
Full Job Description
The Opportunity

In this role, you will lead and grow a team of exceptional machine learning researchers responsible for co-developing methods for extracting information from in-vitro biology using computer vision and machine learning. You will lead an established team of 5 machine learning scientists, several at the Staff level, and be expected to grow it over time. Your team will partner closely with laboratory scientists to develop biological assays in a tight loop, iterating sample preparation protocols and feature extraction methods in tandem. As the manager of this team, you will be responsible for structuring these collaborations in ways that ensure the success of all teams, and your individual team members, as measured by our ability to drive insitro's therapeutic programs forward through understanding of causal human biology.

In addition to working closely with the lab, you and your team will partner closely with our imaging software team, responsible for co-developing and scaling methods your team develops, and computational biologists who will subsequently leverage these tools to extract program-level insights in conjunction with omics (perturb-seq) and clinical insights. As the leader of a team of researchers within the AI/ML organization, you will be expected to remain abreast of the evolving field of in-vitro screening. You will report to the Director of Imaging, Cellular Machine Learning. This is a hybrid position that requires you to be in our South San Francisco headquarters at least three days per week. Join us, and help make a difference to patients!

Responsibilities
  • Lead, mentor, and grow a team of outstanding machine learning scientists to co-develop methods of extracting insights from in-vitro microscopy datasets
  • Work closely with laboratory leadership to structure assay development efforts, and empower members of your team to co-develop in-vitro microscopy assays suitable for genetic perturbation screening, often at whole-genome scale
  • Ensure the successful translation of assays you develop to insitro's computational biology team, who will leverage the assays your teams develop to investigate causal biology through the integration of diverse data modalities, including microscopy
  • Co-develop the product vision for insitro's industry-leading imaging software platform, and continue to support its development through method de-risking and translational development through adherence to established processes for contribution
  • Develop methods of measuring and qualifying microscopy data prior to model training and inference, including those which leverage agentic frameworks, VLMs, and self-supervised classification
  • Stay abreast of industrial trends and scientific literature in order to ensure insitro's methods remain industry-leading and correctly matched to our applications.
  • Set yearly and quarterly strategic roadmaps for platform, set tactical goals for your team, and align with cross-functional stakeholders on a regular basis
  • Work shoulder-to-shoulder with your team where appropriate, participating in method/code review and authorship to model effective execution and cover gaps


About You
  • Strong grounding in computer vision and machine learning fundamentals, with practical judgment about where these methods work and where they fail
  • Demonstrated experience applying CV/ML to pixel data to extract quantitative features and downstream biological insight
  • Working understanding of imaging principles - image formation, microscopy fundamentals, and the artifacts that arise from instruments and sample preparation
  • Hands-on experience with cellular imaging datasets (e.g. fluorescence/confocal or label-free microscopy)
  • 3+ years of people management, including solid-line management of multiple ICs and at least one senior (Staff-level) scientist or engineer
  • Track record of mentoring and growing technical talent day-to-day
  • Technical leadership as a decision-maker on projects, platforms, or teams
  • Strong communication and the ability to collaborate across functions, including with experimental and clinical life scientists


Nice To Have
  • Experience across additional high-content modalities: temporal phenotyping, spatial proteomics, single-cell or bulk omics, or pooled optical (in-situ) screening
  • Familiarity with genetic perturbation screening, ideally at genome scale
  • Experience with data-quality methods for imaging - agentic frameworks, VLMs, or self-supervised approaches for QC and classification
  • Conversational understanding of a relevant disease area (neuroscience, metabolic disease, or cancer biology)
  • Experience contributing to or shaping an imaging/CV software platform


Compensation & Benefits at insitro

Our target starting salary for successful US-based applicants for this role is $247,000 - $262,000. To determine starting pay, we consider multiple job-related factors including a candidate's skills, education and experience, market demand, business needs, and internal parity. We may also adjust this range in the future based on market data.

This role is eligible for participation in our Annual Performance Bonus Plan (based on company targets by role level and annual company performance) and our Equity Incentive Plan, subject to the terms of those plans and associated policies.

In addition, insitro also provides our employees:
  • 401(k) plan with employer matching for contributions
  • Excellent medical, dental, and vision coverage as well as mental health and well-being support
  • Open, flexible vacation policy
  • Paid parental leave of at least 16 weeks to support parents who give birth, and 10 weeks for a new parent (inclusive of birth, adoption, fostering, etc)
  • Quarterly budget for books and online courses for self-development
  • Support to attend professional conferences that are meaningful to your career growth and role's responsibilities
  • New hire stipend for home office setup
  • Monthly cell phone & internet stipend
  • Access to free onsite baristas and daily lunch for employees who are either onsite or hybrid
  • Access to a free commuter bus network that provides transport to and from our South San Francisco HQ from locations all around the Bay Area


#LI-Hybrid

About Insitro

Insitro is a biotechnology company that uses machine learning and data analysis to develop new treatments for diseases. The company's platform combines large-scale data generation, machine learning, and high-throughput biology to create predictive models of disease and drug response. Insitro aims to accelerate the drug discovery process and improve the success rate of clinical trials. The company was founded in 2018 by Daphne Koller, and is headquartered in Palo Alto, California.
Learn more about Insitro
Size
50 employees
Industry
Founded
2018

Similar Jobs

More Jobs at Insitro

More Pharmaceuticals & Biotech Jobs

Find similar Senior Manager, Imaging Machine Learning jobs: