Output

Member of the Technical Staff, Biological Data

Output$100K — $150K *
US-AnywhereRemote in New York, NY
Pharmaceuticals & Biotech
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • PhD in computational biology, biophysics, structural biology, chemistry, biochemistry, or related field with 2+ years of relevant experience.
  • Deep understanding of molecular interactions and protein structure.
  • Experience with large-scale biological datasets, including sourcing and analysis.
  • Strong programming skills in Python for data processing.
  • Knowledge of machine learning data requirements: quality, coverage, and evaluation.
  • Approach data construction as a research problem, analyzing its significance and gaps.

Responsibilities

  • Own and construct high-quality datasets for model learning based on molecular interactions.
  • Develop methods to augment training data using biological insights and reasoning.
  • Design biological benchmarks to evaluate model capabilities meaningfully.
  • Collaborate with researchers to establish data-driven learning strategies for models.
  • Integrate diverse data sources across biological scales into coherent training sets.
  • Implement rigorous evaluation strategies to ensure model generalization and prevent data leakage.
  • Stay updated on biological data sources and methods to continuously enhance training data.

Benefits

  • Encouragement of new ideas and contrarian thinking.
  • Feedback-focused environment promoting growth and development.
  • Autonomy in day-to-day management with a focus on achieving milestones.
  • Excellent medical, dental, and vision coverage.
Full Job Description
The Role

You will own the data that our models learn from. This role requires a deep understanding of molecular biology - what a biological data source contains, what it implies, and what is missing. The quality and coverage of training data determines what our models can learn, and the biological insight behind how that data is constructed is the difference between a model that memorizes and one that reasons.
  • You will construct training datasets that capture how proteins and molecules interact, drawing from diverse biological data sources and extending them with your understanding of molecular principles
  • You will develop methods to expand training data beyond what exists in public databases, using biological and chemical reasoning to create new training signal where current data is sparse or absent
  • You will design benchmarks grounded in real molecular phenomena, measuring whether our models have learned biologically meaningful capabilities rather than statistical shortcuts
  • You will develop data strategies in collaboration with model researchers, determining what the model should learn from, what biological signal to prioritize, and how to sequence learning across modalities
  • You will design approaches for integrating data across biological scales and modalities, building coherent training data from heterogeneous experimental and computational sources
  • You will design rigorous splitting and evaluation strategies that prevent leakage and ensure model capabilities generalize to real biological problems
  • You will stay current with biological data sources, experimental methods, and molecular databases, continuously identifying new sources of training signal

About You
  • You have a PhD in computational biology, biophysics, structural biology, chemistry, biochemistry, or a related biological field with 2+ years of post-doctoral or industry research experience, or equivalent depth through a combined biology and computational background
  • You have deep understanding of molecular interactions, protein structure, and biological data at the molecular level, grounded in first principles rather than surface familiarity
  • You have experience working with large-scale biological or molecular datasets, including sourcing, cleaning, integrating, and analyzing heterogeneous data
  • You have strong programming skills in Python and are comfortable building computational pipelines for data processing at scale
  • You understand what machine learning models require from training data: coverage, quality, balance, and evaluation rigor
  • You approach data construction as a research problem, not a pipeline task: you think carefully about what data means, what signal it carries, and what is absent

Bonus Points
  • You have experience with computational biology tools such as structure prediction, molecular docking, or virtual screening
  • You have experience training or evaluating machine learning models, particularly on molecular or biological data
  • You have publications in computational biology, bioinformatics, or molecular informatics
  • You have a background in cheminformatics or molecular data analysis
  • You have experience working with protein or molecular language models


What We Offer
  • We encourage new and different ideas, creativity and contrarian thinking
  • Healthy feedback focused environment to help you strive - leadership will have high expectations, regularly share constructive feedback, support you and help you grow, and welcome receiving feedback and ideas from you
  • You own your day-to-day management. What we care about is that we all hit our milestones
  • Competitive salary and equity in a growing, well-funded startup
  • Excellent medical, dental, and vision coverage

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