The Simons Foundation, Inc.

Flatiron Research Fellow - Structural and Molecular Biophysics, Center for Computational Biology

Education, Government & Non-Profit
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • Ph.D. in a relevant field (biophysics, applied mathematics, computational biology, etc.)
  • Demonstrated expertise in scientific computation and software development
  • Experience in mathematical modeling and data analysis
  • Ability to conduct original research and collaborate in an interdisciplinary setting
  • Strong communication skills for data documentation and presentations

Responsibilities

  • Perform theoretical and computational research
  • Develop, implement, and maintain scientific software
  • Organize collaborative activities including seminars and workshops
  • Prepare manuscripts for publication and presentations at conferences
  • Assist in mentoring students
  • Provide training and guidance to CCB staff and visitors

Benefits

  • Access to powerful scientific computing resources
  • Financial support for publishing and presentations
  • Opportunity for subsidized housing nearby
  • Engagement in a vibrant scientific community
  • Participation in internal education opportunities
Full Job Description
Description

The Center for Computational Biology(CCB), an in-house research center of the Simons Foundation's Flatiron Institute, is actively seeking enthusiastic, full-time post-doctoral Flatiron Research Fellows to join its Structural and Molecular Biophysics Group. Applicants with strong backgrounds in mathematics, statistics, structural biology, computational chemistry, biochemistry, biophysics, or computer science are encouraged to apply, as are those with software development skills related to methods development in cryo-EM, molecular dynamics simulation, or machine learning in the context of computer vision or protein structure prediction.

POSITION DESCRIPTION

Flatiron Research Fellows in CCB are individuals at the postdoctoral level with backgrounds in one or more of the following areas: applied mathematics, statistics, computational biology, biophysics, computer science, engineering, mathematical physics, or related disciplines.

Reporting to the Group Lead, Fellows are expected to carry out an active research program that can be independently directed and/or involve substantial collaboration with other members of CCB or the Flatiron Institute. In addition to their research, Fellows help build the rich scientific community at CCB and the Flatiron Institute by participating in seminars, colloquia, and group meetings; developing their software, mathematical and computational expertise through internal education opportunities; and sharing their knowledge through scientific publications, presentations, and/or software releases, with the financial support of the Institute. Fellows have access to the Flatiron Institute's powerful scientific computing resources.

Responsibilities include but are not limited to:

  • Performing theoretical and computational research
  • Developing, implementing and maintaining scientific software
  • Participating in the organization of CCB and Flatiron-wide collaborative activities including seminars, workshops and meetings
  • Participating in the preparation of manuscripts for publication and of presentations at scientific conferences
  • Assisting in student mentorship
  • Sharing expertise and providing training and guidance to CCB staff and visitors as needed.


Fellows will be based, and have a principal office or workspace, at the Simons Foundation's offices in New York City. The initial appointments for Flatiron Research Fellows are generally for two years, with the possibility of renewal for a third year, contingent on performance. FRFs may be eligible for subsidized housing within walking distance of CCB.

The anticipated start date is September 2027.

Qualifications

Education

  • Ph.D. in a relevant field (biophysics, applied mathematics, statistics, computational biology, computer science, engineering, mathematical physics, or related disciplines)


Related Skills & Other Requirements

  • Demonstrated abilities in mathematical modeling, analysis and/or scientific computation, scientific software and algorithm development, data analysis and inference, and image analysis
  • Ability to do original and outstanding research in computational biology, and expertise in computational methods, data analysis, software and algorithm development, modeling machine learning, and scientific simulation
  • Ability to work well in an interdisciplinary environment, and to collaborate with experimentalists
  • Strong oral and written communication, data documentation, and presentation skills


COMPENSATION AND BENEFITS

The full-time annual compensation for this position is USD$95,000. In addition to competitive salaries, the Simons Foundation provides employees with an outstanding benefits package.

Application Instructions

To apply, please submit the following via the application portal:

  1. Cover Letter, which should include a summary of applicants' most significant contributions in graduate school
  2. Curriculum vitae with publications list and, if relevant, links to software
  3. Research statement of no more than three (3) pages describing the applicant's past important results, current and future research interests which may include both scientific topics and algorithm and software development, and potential synergies with activities at CCB
  4. Two (2) letters of recommendation


Applications will generally be reviewed beginning November 2026, and will be considered on a rolling basis until the positions are filled. For full consideration, candidates are strongly encouraged to submit their complete application by November 30, 2026.

SELECTION CRITERIA

Applications will be evaluated based on:

  • past research accomplishments
  • the proposed research program
  • the synergy of applicant's expertise and research proposal topic with existing CCB staff and research programs, and potential to cross boundaries between CCB groups and/or the Flatiron Institute's other research centers.


Any queries about the application process or about CCB should be directed to [redacted]. Queries about CCB may also be directed to scientific staff at CCB.

Use of Artificial Intelligence (AI) in Application Materials

The Flatiron Institute values authenticity, originality, and transparency throughout the application and hiring process. Applicants are expected to submit application materials that reflect their own original work, experiences, ideas, writing, and scientific or professional judgment. The use of AI-based tools may be appropriate for limited purposes during the hiring process, such as editing, formatting, or code review. However, application materials, including research statements, cover letters, personal statements, and other writing samples, should not be substantially authored or generated by AI systems.

Applicants are encouraged to disclose any significant or material use of AI tools in the preparation of their application materials or throughout the hiring process. The Flatiron Institute does not use AI-based tools to screen applicants.

About The Simons Foundation, Inc.

The Simons Foundation is a private foundation established in 1994 by Jim and Marilyn Simons. The mission of the Simons Foundation is to advance the frontiers of research in mathematics and the basic sciences. The foundation's philanthropic activities include support for scientific research, education and outreach in mathematics and the basic sciences. The foundation has a number of programs, including the Simons Foundation Autism Research Initiative, which supports research on autism spectrum disorders.
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