Alnylam Pharmaceuticals

Senior Manager, US Payroll

Alnylam Pharmaceuticals$133K — $180K *
Business Services
5 - 7 years of experience
Job Overview by Ladders

Qualifications

  • 7-10+ years of progressive payroll experience, including at least 3 years managing high-volume U.S. payroll.
  • Experience owning end-to-end U.S. payroll in a stand-alone or sole-owner capacity.
  • Strong knowledge of federal, state, and local payroll laws, payroll taxation, wage and hour regulations, and multi-state compliance requirements.
  • Hands-on experience with major payroll and timekeeping systems, preferably ADP and Workforce.
  • Advanced Excel or Google Sheets skills, including pivot tables, lookups, reconciliations, and payroll reporting.
  • Experience preparing GL files, supporting audits, and partnering closely with Accounting, Finance, HR, and Benefits.
  • High attention to detail, strong problem-solving skills, discretion with confidential information, and a commitment to a positive employee experience.

Responsibilities

  • Own and execute the end-to-end U.S. payroll process for timely and accurate payroll delivery.
  • Review, validate, and reconcile payroll inputs such as new hires, terminations, and adjustments.
  • Administer time and attendance processes to ensure accurate employee time data collection.
  • Ensure compliance with payroll tax regulations and wage and hour laws across all operational states.
  • Lead payroll audits, maintain internal controls, and support payroll tax filings and reconciliations.
  • Serve as the primary administrator and expert for payroll and timekeeping systems, collaborating with related departments.
  • Prepare payroll reporting and audit materials for Finance, HR, and other business partners.
  • Identify and implement process improvements and automation opportunities for payroll operations.

Benefits

  • Comprehensive medical, dental, and vision coverage.
  • Life and disability insurance.
  • Lifestyle reimbursement program and flexible spending accounts.
  • 401(k) with a generous company match.
  • Paid time off, wellness days, and company holidays.
  • Family resources and leave options.
Full Job Description
Overview

The Senior Manager, U.S. Payroll will own the end-to-end U.S. payroll function, ensuring accurate, compliant, and timely payroll processing for all U.S. employees. This role oversees the full payroll cycle, including data collection, processing, compliance, audits, vendor management, reporting, and system optimization. The ideal candidate is highly detail-oriented, thrives in a fast-paced environment, and brings the expertise to build scalable payroll processes for a growing organization.

This is a hybrid role primarily based in Cambridge, MA.

Key Responsibilities
  • Own and execute the end-to-end U.S. payroll process, ensuring accurate, compliant, and timely payroll delivery for all U.S. employees.
  • Review, validate, and reconcile payroll inputs, including new hires, terminations, compensation changes, bonuses, overtime, leaves, off-cycle payments, corrections, and year-end adjustments.
  • Administer time and attendance processes, ensuring accurate collection, validation, and processing of employee time data.
  • Ensure compliance with federal, state, and local payroll tax, wage and hour, garnishment, and labor regulations across all U.S. states of operation.
  • Lead payroll audits, maintain internal controls, support payroll tax filings and reconciliations, and stay current on regulatory changes impacting payroll operations.
  • Serve as the primary administrator and subject matter expert for payroll and timekeeping systems, partnering with HRIS, Finance, IT, and vendors to test, configure, optimize, and troubleshoot workflows.
  • Prepare payroll reporting, dashboards, GL files, labor costing, accruals, and audit materials for Finance, Accounting, HR, and other business partners.
  • Identify and implement process improvements, automation opportunities, documentation, SOPs, and best practices to support scalable payroll operations.
  • Partner cross-functionally with HR, Benefits, Finance, Accounting, Legal, IT, and business leaders to support merit cycles, bonus payouts, benefits open enrollment, organizational changes, and other payroll-related initiatives.
  • Act as the primary point of contact for payroll questions and escalations, providing clear communication and a positive employee experience related to payroll accuracy, policies, and pay-related changes.

Qualifications
  • 7-10+ years of progressive payroll experience, including at least 3 years managing high-volume U.S. payroll.
  • Experience owning end-to-end U.S. payroll in a stand-alone or sole-owner capacity.
  • Strong knowledge of federal, state, and local payroll laws, payroll taxation, wage and hour regulations, and multi-state compliance requirements.
  • Hands-on experience with major payroll and timekeeping systems, preferably ADP and Workforce.
  • Advanced Excel or Google Sheets skills, including pivot tables, lookups, reconciliations, and payroll reporting.
  • Experience preparing GL files, supporting audits, and partnering closely with Accounting, Finance, HR, and Benefits.
  • High attention to detail, strong problem-solving skills, discretion with confidential information, and a commitment to a positive employee experience.
  • Experience with international payroll processes preferred.


U.S. Pay Range

$133,500.00 - $180,600.00

The pay range reflects the full-time base salary range we expect to pay for this role at the time of posting. Base pay will be determined based on a number of factors including, but not limited to, relevant experience, skills, and education. This role is eligible for an annual short-term incentive award (e.g., bonus or sales incentive) and an annual long-term incentive award (e.g., equity).

Alnylam's robust Total Rewards package is designed to support your overall health and well-being. We offer comprehensive benefits including medical, dental, and vision coverage, life and disability insurance, a lifestyle reimbursement program, flexible spending and health savings accounts and a 401(k)with a generous company match. Eligible employees enjoy paid time off, wellness days, holidays, and two company-wide recharge breaks. We also offer generous family resources and leave. Our commitment to your well-being reflects our belief that caring for our people fuels the impact we create together.

Learn more about these and additional benefits offered by Alnylam by visiting the Benefits section of the Careers website: https://www.alnylam.com/careers

About Alnylam Pharmaceuticals

Alnylam Pharmaceuticals is a biotechnology company that focuses on RNA interference (RNAi) therapeutics. The company's products are designed to silence specific genes that cause diseases. Alnylam's pipeline includes products for the treatment of genetic, cardio-metabolic, and hepatic infectious diseases. The company was founded in 2002 and is headquartered in Cambridge, Massachusetts.
Learn more about Alnylam Pharmaceuticals
Size
1,665 employees
Market Cap
$28.7 billion
Industry
Net Income
-$858.2 million
Founded
2002
5 Year Trend
+78.1%
Revenue
$492.8 million
NASDAQ

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