Scientist I • ML/AI algorithms for Multimodal Foundational Models for Gene Regulation We seek to hire a Research Scientist to design modern machine learning methods to integrate multimodal data and describe disease trajectories and contribute to the mechanistic understanding of Alzheimer's disease pathology. The successful candidate will have a strong background in computational biology, and experience developing deep generative models and Bayesian algorithms. In addition, the ideal candidate will either have experience in causal inference or gene regulatory network inference, or has worked on aspects of gene regulation in disease. Strong preference will be given to individuals with a track record of both individual and team contributions in solving complex research problems, and experience in cutting-edge computational methodologies applied to biological -omics, spatial, pathological, and/or clinical metadata. Essential Functions - Develop modern machine learning algorithms to model disease progression from multimodal data (omics, neuropathology, MRI, genetic information, clinical histories)
- Develop Bayesian statistical models of neurodegenerative progression
- Evaluate models that can harmonize multiple cohort information
- Develop causal models of disease progression
- Stay at the forefront of advances in AI for multimodal disease progression modeling
- Participate in a highly interactive and multidisciplinary environment
- Publish/present findings in peer-reviewed journals/scientific conferences
Note: Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions. This description reflects management's assignment of essential functions; it does not proscribe or restrict the tasks that may be assigned.
Required Education and Experience - Ph.D. in Computer Science, Applied Math, Engineering, Computational Neuroscience, Computational Biology, or related field, or equivalent combination of degree and experience
- Experience working with recent Deep Learning Architectures/Foundational Models
- Experience with Bayesian modeling and inference
- Experience developing causal models
Preferred Education and Experience - Experience with current ML models such as score-based diffusion models, multimodal data fusion transformer architectures, or state-space models.
- Proficiency with cloud computing and with on-prem clusters
- Strong publication track record
- Proven ability to work independently and manage multiple projects simultaneously while meeting deadlines in a highly collaborative environment
- Excellent written and verbal communication skills, with the ability to collaborate effectively in a multidisciplinary team environment.
Physical Demands - Occasional lifting up to 30 pounds (reference: a ream of paper weighs approx. 5lbs
- Fine motor movements in fingers/hands to operate computers and other office equipment; repetitive motion with lab equipment.
Position Type/Expected Hours of Work - This role is currently able to work both remotely and onsite in a hybrid work environment. We are a Washington State employer, and the primary work location for all Allen Institute employees is 615 Westlake Ave N.; any remote work must be performed in Washington State.
Travel - Occasional attendance and participation in national and international conferences
Additional Comments - **Please note, this opportunity offers relocation assistance**
- **Please note, this opportunity may offer visa sponsorship**
Annualized Salary Range $86,500 - $106,500 *
* Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.
Benefits Employees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute's Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute's 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute's benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits .
