Roche

Machine Learning Scientist - Synthesis Planning and Optimization

Roche$147K — $310K *
Pharmaceuticals & Biotech
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • 5-7 years of experience in machine learning with a focus on molecular design and synthesis.
  • Strong understanding of linear algebra, probability, and optimization techniques.
  • Familiarity with chemistry concepts related to synthesis planning and cheminformatics tools like RDKit or Openeye.
  • Proficient in Python and modern ML frameworks such as PyTorch or JAX.
  • PhD or equivalent research depth in a quantitative field like machine learning, computational chemistry, or statistics.
  • Demonstrated history of scientific contributions through publications or projects hosted online.

Responsibilities

  • Develop machine learning methods for synthesis-aware molecular design.
  • Integrate proprietary data for synthesis modeling and workflows.
  • Construct scalable pipelines for automated synthesis interfacing.
  • Design novel algorithms for batch synthesis planning.
  • Publish research findings and present at conferences.
  • Collaborate with computational and experimental teams within Roche and academic partners.

Benefits

  • Access to a comprehensive benefits package.
  • Opportunity for discretionary annual bonuses based on performance.
  • Engagement in cutting-edge research in AI and drug discovery.
Full Job Description
The Position

Join the small-molecule team within AI for Drug Discovery (AI4DD), formerly Prescient Design, at Roche and Genentech’s Computational Sciences Center of Excellence as a Machine Learning Scientist / Senior Machine Learning Scientist in Synthesis Planning and Optimization. You will build ML methods that design molecules we can actually make — closing the loop between generative design and automated synthesis.

The Opportunity:

  • Develop and advance machine learning methods for synthesis-aware molecular design across retrosynthesis, synthesis planning, molecular generation, and search in synthesizable chemical spaces.
  • Integrate proprietary reaction and biochemical data to design the next generation of synthesis-aware models and workflows for hit finding and optimisation.
  • Build robust, scalable pipelines for active-learning loops that interface directly with automated and high-throughput synthesis platforms.
  • Design novel batch synthesis-planning algorithmsthat maximise chemical-space coverage, information gain and experimental efficiency.
  • Drive scientific impact through publications, open-source releases, and conference talks.
  • Collaborate widely with computational and experimental researchers at Roche and with academic partners.

Who you are:

  • You bring deep machine-learning expertise with a strong foundation in linear algebra, probability and optimization, and hands-on experience in modern machine learning approaches such as graph-neural networks, sequence/language models and reinforcement learning.
  • You are familiar with chemistry concepts relevant to synthesis planning and molecular optimisation as well as small molecule data and cheminformatics toolkits such as RDKit or Openeye.
  • You are fluent in Python and have experience with modern ML frameworks like PyTorch or JAX as well as scientific software development.
  • You hold a PhD or equivalent research depth in machine learning, computational chemistry, chemical engineering or a related quantitative field such as physics or statistics.
  • You have a record of scientific excellence evidenced by journal and conference publications or a public portfolio of relevant projects (e.g. hosted on GitHub/GitLab)..

Preferred:

  • Experience with retrosynthesis or synthesis-planning models.

  • Experience with automated/high-throughput synthesis.

If designing molecules that move from screen to synthesis to patients excites you, apply now and help build self-driving discovery at Roche.

The expected salary range for this position based on the primary location of California for the Machine Learning Engineer is $147,600, - $274,000, and the Senior Machine Learning Engineer for California is $167,400 - $310,800. Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits detailed at the link provided below.

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Where pay transparency applies, details are provided based on the primary posting location. For this role, the primary location is San Francisco. If you are interested in additional locations where the role may be available, we will provide the relevant compensation details later in the hiring process.

About Roche

Roche Holding AG is a Swiss multinational healthcare company that operates worldwide under two divisions: Pharmaceuticals and Diagnostics. Its holding company, Roche Holding AG, has bearer shares listed on the SIX Swiss Exchange. The company headquarters are located in Basel. Roche is the largest pharmaceutical company in the world, and the leading provider of cancer treatments globally. The company also produces a range of diagnostic tests for medical professionals and patients. Roche was one of the first companies to bring targeted treatments to patients. In 2019, Roche had over 100,000 employees worldwide, and generated revenue of CHF 61.5 billion.
Learn more about Roche
Size
100,920 employees
Industry
NASDAQ

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