Allen Institute for Brain Science

Director, Scientific Computing - Neural Dynamics

Allen Institute for Brain Science$224K — $294K *
Pharmaceuticals & Biotech
8 - 10 years of experience
Job Overview by Ladders

Qualifications

  • Bachelor's degree in computer science, engineering, or a related field; or equivalent combination of education and experience
  • Minimum of 10 years of experience in computer science, data engineering, software development, data science, machine learning or related fields
  • Proven experience in scaling tools and algorithms for large datasets
  • Expertise in ML and agentic workflows applied to large datasets
  • Experience managing and leading engineering teams
  • Strong leadership, analytical, and problem-solving skills
  • Excellent communication skills for collaboration in multidisciplinary environments

Responsibilities

  • Execute a long-term strategy to scale computing platforms and data infrastructure
  • Serve as a senior technology leader collaborating across teams
  • Establish best practices for software engineering and data management
  • Develop strategic collaborations with academic and technology partners
  • Lead analysis of petascale multimodal biological data using state-of-the-art ML
  • Build and operate performant data processing pipelines
  • Identify and teach emerging technologies to maintain leadership in ML and AI

Benefits

  • Medical, dental, vision, and basic life insurance
  • 401k plan enrollment eligible for employees
  • Paid time off as outlined in the Benefits Guide
  • Relocation assistance offered as part of the employment package
  • Potential for work visa sponsorship
Full Job Description
Director, Scientific Computing - Neural Dynamics

The goal of the Neural Dynamics accelerator is to understand how the brain generates flexible behavior. We aim to uncover the algorithms-implemented by dynamics in brain-wide neural circuits-that allow animals to build internal models, process information, and choose actions.

We are searching for a Director of Scientific Computing to define and execute the long-term scientific computing strategy that powers Neural Dynamics' research programs and radical approach to open science. The Director will oversee engineering capabilities that empower internal and external scientists to make discoveries using petabyte scale biological datasets and large foundation and mechanistic models of the brain.

We are an equal opportunity employer and strongly encourage people from all backgrounds to apply for our open positions.

Essential Functions
  • Execute a long-term strategy to scale computing platforms, data infrastructure, and data processing capabilities to support ambitious science projects
  • Serve as a senior technology leader, collaborating with scientific, operational, and administrative teams
  • Establish best practices and standards for software engineering, including data management and infrastructure usage
  • Develop and foster strategic collaborations with academic institutions, non-profits, technology companies, and community standards bodies
  • Lead the analysis of petascale multimodal biological data, leveraging state-of-the-art ML for images, timeseries, and omics data
  • Build and operate performant data processing pipelines for science platforms
  • Identify, adopt and teach emerging technologies to ensure that Neural Dynamics stays at the forefront of ML and AI
  • Partner with scientific and engineering teams across the Institute to enable breakthrough discovery at the intersection of biology and computation and advancing integrated, multimodal data platforms and resources that support open science and broad community use

Note: Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions. This description reflects management's assignment of essential functions; it does not proscribe or restrict the tasks that may be assigned.

Required Education and Experience
  • Bachelor's degree in computer science, engineering, or a related field; or equivalent combination of education and experience
  • Minimum of 10 years of experience in computer science, data engineering, software development, data science, machine learning or related fields
  • Proven experience in scaling tools and algorithms for large datasets
  • Expertise in ML and agentic workflows applied to large datasets
  • Experience managing and leading engineering teams
  • Proven excellent strategic and operational planning skills
  • Strong leadership, analytical, and problem-solving skills
  • Understanding of software engineering best practices
  • Experience in mentoring and career development
  • Excellent written and verbal communication skills, with the ability to collaborate effectively in a multidisciplinary team environment, and being a spokesperson for the organization

Preferred Education and Experience
  • Master's or PhD in a relevant engineering of science discipline
  • Experience with neuroscience or other biomedical sciences
  • Expertise in ML applied to large-scale image data and / or time-series analysis
  • Expertise in cloud computing, including strategy, deployment, and management
  • Experience in integrating scientific priorities and operational excellence
  • Experience in managing complex technology operations and multi-disciplinary teams
  • Demonstrated capability in financial planning and oversight, people management, and meeting aggressive timelines

Physical Demands
  • Fine motor movements in fingers/hands to operate computers and other office equipment

Position Type/Expected Hours of Work
  • This role is currently working onsite and is expected to work onsite for the majority of the working hours. We are a Washington State employer, and the primary work location for Allen Institute employees is 615 Westlake Ave N.

Travel
  • Attendance and participation in national and international conferences as appropriate

Additional Comments
  • Please note, this opportunity offers relocation assistance
  • Please note, this opportunity may offer work visa sponsorship

Annualized Salary Range
  • $224,200 - $294,250

* Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.

Benefits
  • Employees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute's Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute's 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute's benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits.

About Allen Institute for Brain Science

The Allen Institute for Brain Science is a division of the Allen Institute, based in Seattle, Washington, that focuses on bioscience research. Founded in 2003, it is dedicated to accelerating the understanding of how the human brain works. With the intent of catalyzing brain research in different areas, the Allen Institute provides free data and tools to scientists. Started with $100 million in seed money from Microsoft co-founder and philanthropist Paul Allen in 2003, the institute tackles projects at the leading edge of science—far-reaching projects at the intersection of biology and technology. The resulting data create free, publicly available resources that fuel discovery for countless researchers. Hongkui Zeng is the director of the institute.
Learn more about Allen Institute for Brain Science

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