Job Description

Department Description:

The Department of Neurology is currently the largest recipient of NIH awards among departments of neurology in US medical schools and has many notable senior faculty including nine members of the Institute of Medicine, six members of the American Academy of Arts and Sciences, three members of the National Academy of Sciences, and a Nobel laureate.

Job Summary:

Uses professional bioinformatics concepts. Applies computational procedures to resolve a variety of analysis and research issues. Works on assignments of moderate scope where analysis of data requires a review of a variety of factors. Assists in additional analyses as needed to achieve research objectives.

A bright, hardworking individual with very strong communication and organizational skills is sought by the Department of Neurology, University of California at San Francisco, to serve as a staff bioinformatician providing support for ongoing research projects related to the analysis of phage immunoprecipitation, metagenomic, transcriptomic (bulk and single cell), and immune repertoire (bulk and single cell) sequencing data. We are seeking an individual with experience in data science, proteomics and open-source software tools and ability to write custom scripts for high throughput sequence mapping and alignment; download and upload of data and integration of data pipelines with public repositories; assisting in management of large genomics datasets as well as writing custom computational solutions when available tools are inadequate and/or if these are necessary to resolve bugs in existing software. Plus if individual possess knowledge of PhIP-Seq assay and antigen discovery in autoimmune and infectious diseases generally.

Responsibilities

of time

Essential Function (Yes/No)

Key Responsibilities

(To be completed by Supervisor)

50
yes
Utilizes complex bioinformatics concepts to analyze, interpret or create complex biological or research data.

Designs, develops, debugs and utilizes computer programs.

15
yesConducts advanced bioinformatics programming and testing of new algorithms that interact with other related databases.
10
yesUtilizes existing algorithms, techniques, and statistical methodologies to conduct moderately complex data analysis.
10
yesAssists with development and implementation of changes to operational systems and databases.
5
yes
Performs complex data modeling, performance and integration testing, and builds user interfaces for a variety of internal and external constituents.

5
yesRecommends changes in development and maintenance for analysis algorithms, tools and infrastructure.
5
yesMaintains web pages.
0

100%
(To update total %, enter the amount of time in whole numbers (without the % symbol - e.g., 15, 20) then highlight the total sum (e.g., 1%) at the bottom of the column and press F9. The total sum should add up to 100%.)

Qualifications

Required Qualifications:

• Bachelor's degree in biological science, computational / programming, or related area and minimum three years of experience or equivalent experience / training.
• Working knowledge of bioinformatics methods and data structures.
• Working knowledge of applications programming and web development.
• Working knowledge of databases.
• Working project management skills.
• Working knowledge of modern biology and applicable field of research
• Interpersonal skills in order to work with both technical and non-technical personnel at various levels in the organization.
• Ability to communicate technical information in a clear and concise manner.

Preferred Qualifications:

• Master's degree in bioinformatics or computer science
• Self motivated, able to learn quickly, meet deadlines and demonstrate problem solving skills.
• Working knowledge of application and data security concepts

Salary Information

The final salary and offer components are subject to additional approvals based on UC policy.

Your placement within the salary range is dependent on a number of factors including your work experience and internal equity within this position classification at UCSF. For positions that are represented by a labor union, placement within the salary range will be guided by the rules in the collective bargaining agreement.

To learn more about the benefits of working at UCSF, including total compensation, please visit: https://ucnet.universityofcalifornia.edu/compensation-and-benefits/index.html