Allen Institute for Brain Science

Software Engineer II

Allen Institute for Brain Science$119K — $149K *
Information Technology
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • Bachelor's degree in computer science or equivalent experience
  • Minimum 1 year of related experience
  • Proficient in Typescript/CSS/React for web apps
  • Skilled in Python with scientific libraries like numpy and pandas
  • Interest in performance optimization and scalability
  • Familiarity with relational and document databases
  • Foundation in matrices and linear algebra

Responsibilities

  • Create and maintain core functionality of image analysis and visualization tools
  • Implement front-end design solutions as specified
  • Develop Python code to assist scientists in their work
  • Optimize handling of large image arrays and metadata
  • Collect requirements and identify opportunities for new tools
  • Collaborate with design on technical approaches
  • Follow best practices for software development and documentation

Benefits

  • Medical, dental, and vision insurance
  • Basic life insurance
  • 401k plan enrollment
  • Paid time off
  • Opportunity for professional growth in a supportive environment
Full Job Description
Software Engineer II

We are searching for a talented and enthusiastic developer to build Web-based and Python tools for processing and visualizing large scale 5D biological imaging data. The ideal candidate enjoys learning new tools and techniques while remaining diligent and detail oriented. This engineer will receive technical guidance and enjoy professional growth opportunities in a supportive environment. As a member of our close, collaborative team, you will have the freedom to contribute to as much of our code and design processes as you would like, based on your interests and skills.

Essential Functions
  • Front end: create and maintain core functionality of image analysis, visualization, and data management tools
  • Implement front end design solutions to specification
  • Develop Python code to directly assist scientists to simplify and scale their work
  • Optimize loading, saving, and converting large image arrays with metadata
  • Collect requirements and find opportunities for new tools
  • Actively participate in collaboration with design, giving thoughtful input on technical approach and/or alternatives
  • Perform software development duties using best practices - follow industry standards, develop unit tests, participate in code reviews, etc.
  • Follow the Allen Institute's software management and deployment standards including source code management, issue tracking, staging and deployment standards, and documentation

Required Education and Experience
  • Bachelor's degree in computer science, or equivalent combination of degree and experience
  • Minimum 1 year of related experience
  • Experience with Typescript/CSS/React and deploying web applications
  • Experience with Python for scientific computing; for example: numpy, pandas, scipy, xarray, dask
  • Experience or interest in performance optimization and scalability
  • Familiarity with both relational and document databases
  • Solid foundation in matrices and linear algebra

Preferred Education and Experience
  • Experience working on an agile development team
  • Enthusiasm for working closely with cross-functional colleagues and stakeholders
  • Experience building and maintaining server-side applications, including data access APIs
  • Interest in, or experience with, 3D graphics such as OpenGL, Vulkan, DirectX, three.js
  • Experience with AI, running ML models and evaluating results
  • Experience with build processes and continuous integration such as GitHub Actions
  • Familiarity with C++
  • Strong communication skills

Position Type/Expected Hours of Work
  • This role is currently able to work both remotely and onsite in a hybrid work environment. We are a Washington State employer, and the primary work location for all Allen Institute employees is 615 Westlake Ave N.; any remote work must be performed in Washington State.

Annualized Salary Range

$119,650 - $149,550*

* Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.

Benefits

Employees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute's Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute's 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute's benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits.

About Allen Institute for Brain Science

The Allen Institute for Brain Science is a division of the Allen Institute, based in Seattle, Washington, that focuses on bioscience research. Founded in 2003, it is dedicated to accelerating the understanding of how the human brain works. With the intent of catalyzing brain research in different areas, the Allen Institute provides free data and tools to scientists. Started with $100 million in seed money from Microsoft co-founder and philanthropist Paul Allen in 2003, the institute tackles projects at the leading edge of science—far-reaching projects at the intersection of biology and technology. The resulting data create free, publicly available resources that fuel discovery for countless researchers. Hongkui Zeng is the director of the institute.
Learn more about Allen Institute for Brain Science

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