Thermo Fisher Scientific

Protein Analytical Scientist – Mass Spectrometry (Large Molecules)

Thermo Fisher Scientific$95K — $115K *
Pharmaceuticals & Biotech
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • Ph.D. in Analytical Chemistry, Biochemistry, Chemistry, Pharmaceutical Sciences, or related field (0-3 years experience), or M.S. (3+ years), or B.S. (6+ years).
  • Strong background in analytical chemistry and biopharmaceutical characterization.
  • Hands-on experience with high-resolution mass spectrometry platforms (e.g., Orbitrap).
  • Expertise in LC-MS method development for large molecules; MAM and iMAM experience is a plus.
  • Experience with therapeutic proteins characterization (mAbs, bsAbs, ADCs).
  • Knowledge of protein post-translational modifications and analytical techniques.

Responsibilities

  • Develop and execute LC-MS methods for therapeutic protein characterization.
  • Analyze mass spectrometry datasets for post-translational modifications and structural attributes.
  • Characterize critical quality attributes using orthogonal techniques.
  • Perform intact mass analysis, peptide mapping, and related workflows.
  • Prepare scientific reports and presentations for stakeholders.
  • Troubleshoot methods and investigate unexpected results.
  • Maintain and verify performance of mass spectrometers and associated equipment.

Benefits

  • Choice of national medical, dental, and vision plans.
  • Employee assistance and family support programs, with tuition reimbursement.
  • At least 120 hours of paid time off (PTO) and 10 paid holidays annually.
  • Paid parental leave for bonding (3 weeks) and caregiver leave (8 weeks).
  • Competitive 401(k) savings plan.
  • Employee Stock Purchase Plan (ESPP) to buy company stock at a discount.
Full Job Description

Work Schedule

Environmental Conditions

Job Description

Location: On-site Hunt Valley, MD. Relocation assistance is NOT provided. 

  • Must be legally authorized to work in the United States without sponsorship.
  • Must be able to pass a comprehensive background check, which includes a drug screening.

Discover Impactful Work:

We are looking for a motivated individual to join our Global Bioproduction Analytics Team. This position supports a cross-functional team working toward the design and commercialization of new cell culture media and media supplement products. The successful candidate will have extensive experience with high-resolution LC-MS workflows for large molecules, including monoclonal antibodies (mAbs), bispecific antibodies (bsAbs), antibody-drug conjugates (ADCs), and other therapeutic proteins. This role requires strong analytical problem-solving skills, the ability to interpret complex datasets, and close collaboration with cross-functional teams to deliver high-quality analytical solutions that accelerate cell culture media development.

What You Will Do:

  • Develop, optimize, and execute LC-MS methods for the characterization of therapeutic proteins using high-resolution mass spectrometry platforms.
  • Analyze and interpret complex mass spectrometry datasets to identify and characterize post-translational modifications (PTMs), sequence variants, chain mispairing, and structural attributes of monoclonal antibodies, bispecific antibodies, ADCs, and other protein therapeutics.
  • Characterize critical quality attributes (CQAs), including glycan heterogeneity, charge variants, aggregation, and molecular integrity using orthogonal analytical techniques.
  • Perform intact mass analysis, middle-down characterization, peptide mapping, and other large molecule MS-based workflows.
  • Prepare clear, accurate, and scientifically sound reports, technical presentations, and analytical documentation for internal and external stakeholders.
  • Troubleshoot analytical methods, investigate unexpected results, and recommend scientifically justified solutions.
  • Perform routine testing, maintenance, troubleshooting, and performance verification of mass spectrometers, liquid chromatography systems, and associated instrumentation to ensure reliable operation.
  • Stay up-to-date with the latest technological and practical advancements in the field of analytical chemistry as they pertain to cellular processes.

How You Will Get Here:

Minimum Qualifications:

  • Ph.D. in Analytical Chemistry, Biochemistry, Chemistry, Pharmaceutical Sciences, or a related scientific discipline with 0–3 years of relevant experience; or M.S. with 3+ years; or B.S. with 6+ years of relevant industry experience.

Preferred Qualifications:

  • Strong background in analytical chemistry, protein biochemistry, or biopharmaceutical characterization.
  • Hands-on experience operating high-resolution mass spectrometry platforms (e.g., Orbitrap or equivalent).
  • Demonstrated expertise in LC-MS method development and optimization for large molecule characterization. Experience with MAM and iMAM workflows is a plus.
  • Experience with intact mass analysis, middle-down workflows, peptide mapping, and disulfide bond characterization is a plus.
  • Proven experience characterizing monoclonal antibodies, bispecific antibodies, antibody fragments, antibody-drug conjugates, or related therapeutic proteins.
  • Knowledge of protein post-translational modifications, glycosylation analysis, charge variant analysis, aggregation analysis, and higher-order structure characterization.
  • Experience using data analysis software for mass spectrometry interpretation and reporting.
  • Excellent troubleshooting, critical thinking, and problem-solving skills.
  • Strong written and verbal communication skills with the ability to present complex analytical data to diverse audiences.
  • Ability to manage multiple projects in a fast-paced, collaborative environment while maintaining high scientific and quality standards.

We offer competitive remuneration, annual incentive plan bonus scheme, healthcare, company 401k, and a range of employee benefits! Thermo Fisher Scientific offers employment with an innovative, forward-thinking organization, and outstanding career and development prospects. We offer an exciting company culture that stands for integrity, intensity, involvement, and innovation. 

Compensation and Benefits

The salary range estimated for this position based in Maryland is –.

This position may also be eligible to receive a variable annual bonus based on company, team, and/or individual performance results in accordance with company policy. We offer a comprehensive Total Rewards package that our U.S. colleagues and their families can count on, which includes:

  • A choice of national medical and dental plans, and a national vision plan, including health incentive programs

  • Employee assistance and family support programs, including commuter benefits and tuition reimbursement

  • At least 120 hours paid time off (PTO), 10 paid holidays annually, paid parental leave (3 weeks for bonding and 8 weeks for caregiver leave), accident and life insurance, and short- and long-term disability in accordance with company policy

  • Retirement and savings programs, such as our competitive 401(k) U.S. retirement savings plan

  • Employees’ Stock Purchase Plan (ESPP) offers eligible colleagues the opportunity to purchase company stock at a discount

For more information on our benefits, please visit: https://jobs.thermofisher.com/global/en/total-rewards

About Thermo Fisher Scientific

Thermo Fisher Scientific Careers

Join the vibrant team at Thermo Fisher Scientific, a global leader in serving science and making the world healthier, cleaner, and safer. With a workforce of over 75,000 professionals, Thermo Fisher Scientific offers unparalleled job opportunities and a culture of innovation that propels your career to new heights. Work You’ll Do At Thermo Fisher Scientific, you will be part of a team that is dedicated to enabling our customers to make the world healthier. Whether you are involved in the development of life-saving drugs or innovative environmental solutions, your work will have a profound impact on society. Our commitment to leadership in the industry is unwavering. With Thermo Fisher Scientific, you will lead projects that set standards in scientific inquiry and market leadership. You will work at the intersection of science, technology, and industry expertise, driving digital innovation in every aspect of our business. Join our diverse team of professionals and engage in roles that span across various functions and disciplines. From research and development to marketing and sales, the breadth of job opportunities available means that you can find the perfect match for your skills and passions. Innovative Work As part of our team, you will have access to cutting-edge tools and technologies that foster creativity and innovation. Thermo Fisher Scientific is home to a dynamic range of career paths, all designed to challenge you and help you grow as a professional. Our employment philosophy emphasizes diversity and inclusivity, ensuring that all team members have the opportunity to thrive. We believe in nurturing talent through robust training programs, leadership development, and opportunities for career advancement. Be Part of a Great Team Working at Thermo Fisher Scientific means being part of a global network of enthusiastic, talented, and ambitious individuals. Our culture is built on collaboration, where each member’s unique skills and perspectives are valued. You will enjoy benefits that support both your professional growth and personal well-being. Future-Proof Your Career Embark on a journey of growth and continuous learning with Thermo Fisher Scientific. We offer a variety of training and development programs that cater to your interests and career goals. From internships for budding scientists to leadership training for aspiring executives, our programs are designed to equip you with the skills needed for a successful and fulfilling career. Explore Discover how our commitment to innovation leads to advancements in health and science: [Read More] Learn about our leadership in environmental sustainability and how you can contribute: [Read More] The Thermo Fisher Scientific Difference Our global presence and commitment to innovation mean that your work extends beyond borders and makes a tangible impact worldwide. The collaboration between our teams drives our leadership in the scientific community and contributes to a culture that embraces diversity and fosters professional growth. Stay Connected Join Our Team Search open positions that match your skills and interest. We are always on the lookout for passionate, curious, and driven team players. Explore our job opportunities and find out how you can contribute to our meaningful work. SEARCH THERMO FISHER SCIENTIFIC JOBS Keep Up to Date Stay ahead with career tips, insider perspectives, and industry-leading insights you can put to use today—all from the people who work here. READ CAREERS BLOG Job Alert Emails Customize your subscription to receive job alerts, latest news, and insider tips tailored to your preferences. Discover the exciting and rewarding opportunities that await at Thermo Fisher Scientific.
Learn more about Thermo Fisher Scientific
Size
130,000 employees
Market Cap
$213.3 billion
Industry
Net Income
$6.3 billion
Founded
1956
5 Year Trend
+16.5%
Revenue
$32.2 billion
NASDAQ

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