Flagship Pioneering

Engineer, Flight Systems

Flagship Pioneering$74K — $126K *
Aerospace & Defense
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • Bachelor's or Master's in aerospace, electrical, mechanical engineering or computer science; relevant hands-on experience considered.
  • 3-6 years with Ardupilot systems in real mission contexts.
  • Proficient in C++ and/or Python; experience with ArduPilot source code and MAVLink protocol.
  • Practical experience with fixed-wing airframe builds; understanding of aerodynamic design.
  • FAA Part 107 Remote Pilot Certificate is a plus; experience with BVLOS waivers is highly valued.
  • Experience in RF link design and C2 spectrum compliance for UAVs.
  • Strong documentation skills for maintaining test reports and specifications.

Responsibilities

  • Configure and iterate on autopilot firmware for fixed-wing UAVs.
  • Design and build fixed-wing airframes for various payloads and applications.
  • Plan and execute BVLOS operations and flight tests, ensuring compliance and safety.
  • Develop C2 link architecture and RF link budget for long-distance missions.
  • Create software for ground station user interfaces and capabilities.
  • Analyze flight logs to enhance vehicle performance and reliability.
  • Collaborate with science and field teams for sensor integration and data validation.
  • Document designs and processes to build a scalable engineering knowledge base.

Benefits

  • Healthcare coverage
  • Annual incentive program
  • Retirement benefits
  • Broad range of other benefits
Full Job Description
THE ROLE

We are seeking a UAS Flight Engineer to join our growing hardware team. This is a hands-on engineering role focused on fixed-wing UAV development, BVLOS operations planning, and systems integration. You will focus on a critical component of our platform - designing, building, operating, and iterating on a purpose-built aerial system where the airframe, autopilot stack, and payload integration are all co-developed from the ground up. This role will work alongside a small, highly technical team at the intersection of advanced science, cutting-edge engineering, and field operations, moving us from early prototype flights toward a hardened, field-proven platform capable of executing precision missions in demanding international environments.

KEY RESPONSIBILITIES
  • Configure, tune, and iterate on autopilot firmware for fixed-wing airframes, including PID tuning, failsafe logic, auto modes, and mission scripting;
  • Design, build, and iterate on fixed-wing airframes suited to a variety of payload designs, working across aerodynamics, structures, and propulsion integration;
  • Plan BVLOS operations planning and flight test execution, including waiver compliance, pre-flight risk assessment, and real-time mission monitoring;
  • Develop C2 link architecture, RF link budget, electronics integration, and spectrum compliance for long-range operations;
  • Design software for custom ground station capabilities and user interfaces;
  • Analyze flight logs (MAVExplorer, Flight Review) to diagnose anomalies and drive iterative improvements to vehicle performance and reliability;
  • Collaborate with the science and field teams to integrate and validate onboard sensors, ensuring data quality and mission success;
  • Document designs, test results, and standard operating procedures to build a scalable engineering knowledge base for the drone program.

PROFESSIONAL EXPERIENCE & QUALIFICATIONS
  • Bachelor's or Master's degree in aerospace engineering, electrical engineering, mechanical engineering, computer science, or a closely related field; equivalent hands-on experience will be considered.
  • 3-6 years of hands-on experience with Ardupilot-based autopilot systems, preferably in production-ready or real mission contexts;
  • Proficiency in C++ and/or Python with experience reading, modifying, and debugging ArduPilot source code; familiarity with MAVLink protocol and GCS software (Mission Planner, QGroundControl);
  • Practical fixed-wing airframe build and flight test experience, including manual RC aircraft proficiency and an understanding of aerodynamic design trade-offs for custom platforms;
  • FAA Part 107 Remote Pilot Certificate is a plus (or the ability to obtain is required); experience with BVLOS waivers, 107 Waivers, COA applications, manned aircraft operations, or international UAS regulations is a strong plus;
  • Experience with RF link design, C2 spectrum compliance, antenna selection, and electronics integration for long-range UAV systems;
  • Electronics design, integration, and PCB design is a strong plus;
  • Experience with atmospheric sensing, meteorology or weather forecasting is a strong plus;
  • Ability to work hands-on across the full hardware stack in a small team environment - from firmware and electronics to airframe fabrication and field deployment;
  • Strong documentation habits, including maintaining changelogs, flight logs, test reports, and component specifications suitable for future scaling and external review;
  • Experience supporting field campaigns or flight tests in remote or international environments is a plus;
  • Genuine passion for building novel aerial platforms with real-world scientific or environmental impact, and comfort working at the intersection of hardware, firmware, and field operations.

LOCATION: Boulder, CO

The salary range for this role is $74,000 - $126,500. Compensation for the role will depend on a number of factors, including a candidate's qualifications, skills, competencies, and experience. Flagship Pioneering currently offers healthcare coverage, annual incentive program, retirement benefits and a broad range of other benefits. Compensation and benefits information is based on Flagship Pioneering's good faith estimate as of the date of publication and may be modified in the future.

About Flagship Pioneering

Flagship Pioneering is a life sciences innovation enterprise that conceives, creates, resources, and develops first-in-category life sciences companies. The firm operates through its Flagship Labs unit, which is a dedicated innovation foundry that invents and launches transformative companies. Flagship Pioneering has created over 100 scientific ventures, resulting in over $34 billion in aggregate value, 500+ issued patents, and more than 50 clinical trials for novel therapeutic agents. The firm's portfolio includes companies in the fields of therapeutics, health technologies, and sustainability. Flagship Pioneering was founded in 2000 and is headquartered in Cambridge, Massachusetts.
Learn more about Flagship Pioneering
Size
500 employees
Industry

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