Flagship Pioneering

Associate Director, AI Enablement & Machine Learning

Flagship Pioneering$212K — $318K *
Pharmaceuticals & Biotech
5 - 7 years of experience
Job Overview by Ladders

Qualifications

  • Ph.D. or Master's in Machine Learning, Computational Biology, or related field.
  • 5-8 years in AI/machine learning within biotech, pharma, or life sciences.
  • Strong programming skills in Python and modern machine learning frameworks.
  • Experience with complex biological or biomedical datasets.
  • Knowledge of cloud computing and scalable workflows.

Responsibilities

  • Develop and deploy AI/ML solutions for target discovery and research.
  • Collaborate with scientists to identify high-impact AI opportunities.
  • Apply machine learning techniques like predictive modeling and deep learning.
  • Build analytical workflows for biological datasets.
  • Work with cross-functional teams on scalable tools and workflows.
  • Promote best practices in reproducibility and data governance.
  • Mentor colleagues to enhance AI literacy across the organization.

Benefits

  • Healthcare coverage.
  • Annual incentive program.
  • Retirement benefits.
  • Broad range of additional benefits.
Full Job Description
THE ROLE

Vesalius Therapeutics is seeking an Associate Director, AI Enablement & Machine Learning to help drive the adoption and application of AI, machine learning, and scientific computing across the discovery organization. This individual will partner closely with Biology, Data Science, and Research teams to identify opportunities where AI can accelerate scientific discovery, improve decision-making, and enhance research productivity. This is a highly collaborative, hands-on role that combines technical expertise with scientific curiosity and the ability to translate complex research challenges into practical computational solutions.

KEY RESPONSIBILITIES
  • Develop and deploy AI/ML solutions that support target discovery, translational research, biomarker identification, and scientific decision-making.
  • Partner with scientists and cross-functional teams to identify high-impact opportunities for AI and advanced analytics.
  • Apply modern machine learning techniques, including predictive modeling, deep learning, generative AI, and large language models.
  • Build and maintain analytical workflows for complex biological and multimodal datasets.
  • Collaborate with Data Science and Engineering teams to deploy scalable tools and computational workflows.
  • Promote best practices in reproducibility, model validation, data governance, and AI adoption.
  • Mentor colleagues and help increase AI literacy and computational capabilities across the organization.
  • Stay current on emerging technologies and recommend practical applications that create scientific value.

PROFESSIONAL EXPERIENCE & QUALIFICATIONS
  • Ph.D. or Master's degree in Machine Learning, Computational Biology, Bioinformatics, Data Science, Computer Science, or a related field.
  • Approximately 5-8 years of relevant experience(may include post-doc) applying AI, machine learning, or computational methods in biotechnology, pharmaceuticals, healthcare, or life sciences.
  • Strong programming skills in Python and experience with modern machine learning frameworks.
  • Experience working with biological, biomedical, or other complex scientific datasets.
  • Knowledge of cloud computing environments and scalable computational workflows.
  • Excellent communication skills and ability to collaborate across scientific and technical disciplines.

Preferred
  • Experience supporting drug discovery, genomics, proteomics, biomarker development, generative AI, large language models, knowledge management systems, or AI-enabled research platforms.

Success Profile
  • The ideal candidate is collaborative, intellectually curious, technically strong, and motivated by applying AI to solve meaningful scientific problems. They are equally comfortable engaging with scientists, data scientists, and software engineers and enjoy turning innovative ideas into practical solutions.

The salary range for this role is $212,000 - $318,000. Compensation for the role will depend on a number of factors, including a candidate's qualifications, skills, competencies, and experience. Vesalius Therapeutics currently offers healthcare coverage, annual incentive program, retirement benefits and a broad range of other benefits. Compensation and benefits information is based on Vesalius Therapeutics's good faith estimate as of the date of publication and may be modified in the future.

About Flagship Pioneering

Flagship Pioneering is a life sciences innovation enterprise that conceives, creates, resources, and develops first-in-category life sciences companies. The firm operates through its Flagship Labs unit, which is a dedicated innovation foundry that invents and launches transformative companies. Flagship Pioneering has created over 100 scientific ventures, resulting in over $34 billion in aggregate value, 500+ issued patents, and more than 50 clinical trials for novel therapeutic agents. The firm's portfolio includes companies in the fields of therapeutics, health technologies, and sustainability. Flagship Pioneering was founded in 2000 and is headquartered in Cambridge, Massachusetts.
Learn more about Flagship Pioneering
Size
500 employees
Industry

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