Senior Automation Engineer

Merck Group • $107K — $131K *
Pharmaceuticals & Biotech
5 - 7 years of experience
Job Overview by Ladders

Qualifications

  • Bachelor's Degree in relevant technical field; advanced education preferred.
  • 7+ years of experience in laboratory automation, robotics, or related fields.
  • Strong hands-on experience with automated lab systems.
  • Expertise in integrating laboratory devices into cohesive workflows.
  • Proficiency in low-level control software (C#, Python, etc.).
  • Familiarity with automation software like Hamilton or Biosero.
  • Ability to develop SOPs and training documentation.

Responsibilities

  • Design and build automated workcells with various laboratory technologies.
  • Translate laboratory workflows into scalable automation protocols.
  • Collaborate to automate workflows across multiple lab functions.
  • Develop and troubleshoot automated systems for reliable operation.
  • Lead all phases of automation projects from design to implementation.
  • Ensure data integrity and proper documentation throughout processes.
  • Evaluate and enhance existing automation workflows for efficiency.

Benefits

  • Health insurance and paid time off (PTO).
  • Retirement contributions.
  • Support for professional development and continuous learning.
  • Collaborative and innovative work environment.
Full Job Description
Your Role As our Senior Automation Engineer, you will be part of the Drug Discovery Automation group responsible for leading the design, development, integration, and operation of automated laboratory systems that accelerate analytical development, bioprocessing, and cell therapy workflows. The ideal candidate will have deep hands-on expertise in laboratory automation: the ability to translate manual laboratory processes into robust, scalable, and data-rich automated workflows; integrate liquid handlers, robotic arms, analytical instruments, and imaging technologies; and continuously improve system throughput, reliability, and user experience. Reporting to the Head of Automation and Lab Systems, you will collaborate closely with scientists, analytical development teams, software and data specialists, and external technology partners to ensure automated workflows are reliable, efficient, well documented, and fit for purpose. You will serve as a technical subject matter expert for automation platforms and laboratory digitization initiatives, translating scientific and operational requirements into executable automation solutions. Key Responsibilities
  • Design, build, integrate, test, and operate automated workcells incorporating liquid handlers, robotic arms, analytical instruments, microscope imaging systems, and other laboratory technologies.
  • Translate analytical methods and laboratory workflows into robust, repeatable, and automation-compatible protocols that improve throughput, efficiency, consistency, and data quality.
  • Collaborate with scientists and analytical development teams to automate sample preparation, assay execution, cell monitoring, quality control, and results-generation workflows.
  • Develop and optimize automated workflows using scheduling, orchestration, and instrument-control software; troubleshoot equipment, software, and process issues to maintain reliable day-to-day operation.
  • Lead automation projects from requirements definition and workflow design through implementation, testing, deployment, user training, and ongoing improvement.
  • Promote data integrity, traceability, and consistent documentation across automation, analytical, and laboratory information systems.
  • Partner with scientists to evaluate existing workflows, identify root causes of underused or inefficient automation, and implement corrective and preventative improvements.
  • Use structured experimentation and design-of-experiment approaches to optimize methods, improve throughput, and support successful technology transfer into routine results generation.
  • Contribute to the evaluation and adoption of new automation technologies, software tools, and laboratory platforms that replace manual operations and improve process consistency.
  • Author and maintain technical development procedures, standard operating procedures, user guides, validation and test documentation, and troubleshooting materials for automated workflows and platforms.
  • Train and support scientists, laboratory users, and new automation team members in the operation of automation systems, software platforms, and associated laboratory processes.
  • Establish documentation and knowledge-transfer practices that improve team onboarding and ensure continuity of automation operations.
Who You Are: Minimum Qualifications
  • Bachelor's Degree in Mechanical Engineering, Automation Engineering, Robotics, Bioengineering, Laboratory Science, or a closely related field; advanced education or equivalent practical experience is a plus.
  • At least 7 years of professional experience in laboratory automation, analytical development, robotics, bioprocessing, pharmaceutical development, biotechnology, or a related technical environment.
  • Strong hands-on experience designing, building, testing, commissioning, and operating automated laboratory systems.
  • Experience integrating liquid handlers, robotic arms, analytical instruments, imaging systems, or other laboratory devices into coordinated workflows.
  • Strong low-level control software development (C#, Python, etc).
  • Proficiency with laboratory automation, scheduling, orchestration, or instrument-control software; experience with platforms such as Hamilton liquid handling software, Biosero Orchestrator, or comparable systems is highly relevant.
  • Experience troubleshooting complex systems across hardware, software, instrumentation, laboratory methods, and user procedures.
  • Experience developing technical procedures, SOPs, training materials, and other documentation required to support laboratory automation operations.
  • Proven ability to work effectively in cross-functional teams with scientists, laboratory operations, software or data specialists, and external technology providers.
Preferred Requirements
  • Experience building integrated automated workcells from the ground up, including liquid handlers, robotic arms, analytical devices, and associated software platforms.
  • Experience supporting automation in cell therapy, bioprocessing, analytical development, pharmaceutical development, or another regulated or quality-sensitive laboratory environment.
  • Familiarity with cloud-based laboratory scheduling, modular workflow design, laboratory orchestration, electronic laboratory notebooks, inventory management, and laboratory information systems.
  • Familiarity with SolidWorks, Ansys, Microsoft Excel, or comparable engineering and productivity tools.
  • Self-driven, results-oriented leader with proven collaborative working style.
Pay Range: $107,700-$131,600 The offer range represents the anticipated low and high end of the base pay compensation for this position. The actual compensation offered will be determined by factors such as location, level of experience, education, skills, and other job-related factors. Position may be eligible for sales or performance-based bonuses. Benefits offered by the Company include health insurance, paid time off (PTO), retirement contributions, and other perquisites. For more information click here.

About Merck Group

Merck Group Careers

There has never been a more opportune time to join Merck Group, a leading science and technology company in healthcare, life science, and performance materials. Merck Group offers a plethora of job opportunities that cater to a variety of skills and professional aspirations, making it an ideal environment for both seasoned experts and those at the start of their career journey.

Work You’ll Do

At Merck Group, every team member contributes to breakthrough innovations in healthcare, life sciences, and electronics. The company's commitment to diversity and innovation fuels its leadership in various sectors, driving growth and transformation globally. Merck Group’s career paths are diverse, offering positions that challenge individuals to use their skills in new ways every day, supported by robust training programs and development opportunities.

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Merck Group is not just about jobs; it's about building a career. With a vast array of positions, from research and development to marketing and sales, the company is keen on hiring and nurturing talent to lead industry transformation. Merck Group’s dedication to professional growth is evident in its comprehensive benefits package and performance management processes that aim to maximize individual potential.

Internship Programs

Starting with an internship at Merck Group can be a pivotal step in securing a prosperous career. Interns gain invaluable industry experience, working alongside seasoned professionals and engaging in projects that offer real-world applications of their studies. Internships often lead to full-time employment opportunities, providing a seamless transition from education to professional employment.

Inclusive Culture and Leadership

Merck Group is proud of its inclusive culture that embraces diversity and fosters an environment where all employees can thrive. The company’s leadership is committed to creating a workplace where diverse ideas lead to innovative outcomes. Merck Group also offers diversity training to ensure all team members are equipped to contribute to the company’s inclusive goals.

Networking and Professional Development

Employees at Merck Group are encouraged to engage in networking and professional development activities that enhance their career trajectories. The company hosts various networking events, workshops, and seminars that are designed to hone skills and foster connections within the industry. Leadership development programs are also a cornerstone, preparing employees for future roles of increased responsibility.

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Interested candidates can explore open positions that match their skills and interests through the Merck Group careers page. The company values curious, creative, and solution-driven team players who are eager to make an impact.

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