Johnson, Mirmiran & Thompson Inc, Sparks

Research Engineer

Healthcare
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • 3+ years of experience shipping production web applications end-to-end (front-end, back-end, database, deployment)
  • Strong proficiency in TypeScript/JavaScript, React, Next.js, and Node.js
  • Solid SQL fundamentals and experience with PostgreSQL for schema design and performance
  • Fluency with git for collaborative development via GitHub or GitLab
  • Experience deploying applications on modern cloud platforms (e.g., AWS, Azure)
  • Strong communication skills to bridge gaps between technical and scientific needs

Responsibilities

  • Lead development and completion of the internal Lab Portal, enhancing modules for lab operations and scientific record-keeping
  • Design and implement the lab's data-management layer with a focus on schema and robust ingestion pipelines
  • Oversee the deployment pipeline and maintain operational integrity, including incident response and backups
  • Integrate AI features into the platform, ensuring judicious application of AI tools
  • Create and update technical as well as user documentation, and provide training for new lab members
  • Collaborate closely with PI and lab members to make informed product decisions based on direct scientist feedback
  • Contribute to AI/ML tooling that supports active research in the lab's focus areas

Benefits

  • Access to cutting-edge technology and tools in a dynamic research setting
  • Opportunity to work on impactful projects that contribute to translational cancer research
  • High degree of autonomy in role, enabling personal initiative and innovation
  • Collaboration with a diverse team of scientists and researchers
  • Potential for continued professional development in a supportive environment
Full Job Description
Position Summary:

We have an exciting opportunity to join our team as a Research Engineer. The Research Engineer is the primary engineer responsible for the lab's internal software platform a modern web application that supports all aspects of the lab's daily operations and scientific record-keeping. The engineer will finish building out the existing internal Lab Portal and its modules, design and implement the underlying data-management layer, build integrations to laboratory data (including but not limited to flow cytometry, plate reader, sequencers, mass spectrometers), operationalize an AI-assisted data interrogation system, goals and mentoring framework for the lab, and own the reliability, deployment, and documentation of the platform end to end. This is a highly autonomous, high-impact role for an engineer who wants their work used every day by scientists doing translational cancer research.

Job Responsibilities:

1. Serve as the primary Research Engineer for the internal Lab Portal. Complete build-out of remaining modules and harden shipped modules across lab operations (inventory, ordering, equipment booking, samples), scientific record-keeping (experiments organized by workflow stage, manuscripts, grants, vectors, antibodies), team management (people, schedule, chat, check-ins, IDP and goals framework), and intelligence layers (natural-language search, grants/literature radar, PowerPoint/Excel data capture, AI co-pilot).

2. Design and implement the lab's data-management layer: schema for experiments, samples, instrument runs, and downstream artifacts (analyses, figures, manuscripts); ingestion pipelines from lab instruments; robust import from unstructured sources with schema validation, deduplication, and provenance tracking; and search/retrieval that lets any lab member locate any data by natural-language query.

3. Implement the lab's newly designed goals, performance and mentoring framework end-to-end: annual Individual Development Plans, quarterly objectives, monthly experiment cycles, weekly check-ins, and AI-assisted reflection.

4. Own the deployment pipeline CI/CD, environment configuration, monitoring, incident response, backups, disaster recovery, access controls, and audit trails. Establish and maintain reasonable code-quality practices.

5. Design and integrate AI/LLM features (Lab Memory search, Capture, AI co-pilot, Paper/Grant Auto-Assembler, Risk Engine) with careful prompt engineering, evaluations, guardrails, and honest judgment about when AI is the right tool and when it is not.

6. Write and maintain both technical documentation (for future engineers) and user-facing documentation (for lab members using the system). Train new lab members on the platform during onboarding.

7. Attend weekly lab meeting; sit with the scientists using the system; incorporate their input; make product decisions in close collaboration with the PI and lab members.

Additional Position Specific Responsibilities:

Contribute to AI/ML tooling that supports the lab's science (target discovery, immunopeptidomics, receptor engineering) with lab computational biologists.
Support integration with NYU institutional systems (ordering, IRB/IACUC, grants management, HPC) as needed.
Perform other related duties as assigned.

Minimum Qualifications:

To qualify you must have a 3+ years shipping production web applications end-to-end (front-end, back-end, database, deployment).
Strong proficiency with modern TypeScript/JavaScript React, Next.js (or comparable), Node.js.
Solid SQL fundamentals and Postgres experience; comfortable with schema design, query performance, transactions.
Fluent with git and pull-request-based collaborative development on GitHub or GitLab.
Experience deploying and operating a production application on a modern cloud platform (Vercel, AWS, GCP, Azure, or comparable).
Strong written and verbal communication; able to translate scientist needs into working software.

Preferred Qualifications:

Experience with lab informatics (Benchling, LabArchives, RSpace, eLabFTW, Dotmatics, or comparable ELN/LIMS).
Data engineering (ETL, ingestion, schema design); Python proficiency.
Production experience with modern LLM APIs (prompt engineering, evaluations, RAG).
Direct experience with lab-instrument data integrations.
Scientific or biomedical background prior lab, biotech, or academic science role.

Qualified candidates must be able to effectively communicate with all levels of the organization.

NYU Langone Health provides a salary range to comply with the New York state Law on Salary Transparency in Job Advertisements. The salary range for the role is $84,577.93 - $90,000.00 Annually. Actual salaries depend on a variety of factors, including experience, specialty, education, and hospital need. The salary range or contractual rate listed does not include bonuses/incentive, differential pay or other forms of compensation or benefits.

To view the Pay Transparency Notice, please click here

About Johnson, Mirmiran & Thompson Inc, Sparks

Johnson, Mirmiran & Thompson, Inc. (JMT) is an engineering and architecture firm that provides a range of services, including transportation planning and design, environmental engineering, construction management, and surveying. The company serves clients in the transportation, environmental, and construction industries, as well as government agencies and municipalities. JMT is headquartered in Sparks, Maryland, and has offices throughout the United States. The company was founded in 1971 and has grown to become one of the largest engineering firms in the country. JMT is committed to sustainability and has implemented a number of initiatives to reduce its environmental impact, including the use of renewable energy sources and the implementation of green building practices.
Learn more about Johnson, Mirmiran & Thompson Inc, Sparks
Size
1,500 employees
Industry
Founded
1971

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