Encoded Therapeutics Inc.

Engineer III, Site Engineering & Facilities

Encoded Therapeutics Inc.$90K — $120K *
Pharmaceuticals & Biotech
5 - 7 years of experience
Job Overview by Ladders

Qualifications

  • Bachelor's degree in Engineering (Mechanical, Chemical, or Bioengineering preferred)
  • 5-9 years of relevant experience in biotech, pharmaceutical, or gene therapy
  • Expertise in facility, process, or manufacturing engineering
  • Strong understanding of cGMP systems and FDA/EU regulations
  • Availability for on-call support for operations
  • Excellent troubleshooting and interpersonal skills
  • Willingness to travel up to 10% for vendor visits

Responsibilities

  • Develop site-wide engineering and automation standards as part of the FUME team
  • Provide technical support for engineering and facility capital projects
  • Manage the lifecycle of automation and equipment, including testing and qualification
  • Ensure validated state of equipment through maintenance and calibration
  • Oversee vendor service contracts and coordinate service schedules
  • Deliver troubleshooting support for manufacturing campaigns and coordinate repairs
  • Lead the management of engineering documentation and ensure compliance with regulatory standards
  • Train and mentor the site team on equipment and procedures

Benefits

  • Comprehensive Health Care Plan (Medical, Dental & Vision)
  • 401k Retirement Plan
  • Basic, Voluntary & AD&D Life Insurance
  • Paid Time Off (Vacation, Sick & Public Holidays)
  • Family Leave (Maternity, Paternity)
  • Short Term & Long Term Disability coverage
  • Opportunities for Training & Development
  • Stocked micro-kitchen with drinks and snacks
  • Access to Wellness Resources
Full Job Description
As an Engineer III, Site Engineering & Facilities, you will be a key technical driver in the design, implementation, and lifecycle management of single-use manufacturing systems within our gene therapy production facility. This role serves as a vital cross-functional partner to Manufacturing, Process Sciences, Supply Chain, and Quality Assurance, ensuring that our viral vector production remains compliant, efficient, and innovative within a cGMP environment.
CoreResponsibilities:
Engineering Standards & Automation
  • Standard Development: Serve as a core member of the FUME team, contributing to the creation and application of site-wide engineering and automation standards.
  • Capital Support: Provide technical support for site engineering and facility capital projects. Take ownership of small-scale projects, managing design, procurement, and implementation.

Equipment Lifecycle Management
  • Technical Execution: Execute the full lifecycle of automation and equipment for internal groups, including specification, procurement, testing, onboarding, and qualification (IQ/OQ/PQ).
  • Validation & Maintenance: Sustain the validated state of site equipment through robust preventative maintenance and calibration systems.
  • Vendor Management: Manage vendor service and calibration contracts, review turnover packages, and coordinate on-site service schedules.

Manufacturing Operations & Compliance
  • Manufacturing Support: Deliver real-time troubleshooting for active manufacturing campaigns. Coordinate repairs with external vendors to minimize downtime (includes on-call/weekend support as needed).
  • Quality Documentation: Partner with QA to lead the lifecycle management of engineering documentation, including SOPs, Change Controls, and GEP (Good Engineering Practice) protocols.
  • EHS & Regulatory: Maintain 100% compliance with internal EHS guidelines, site registrations, and cGMP/environmental regulations.

Training & Mentorship
  • Skill Development: Act as a subject matter expert (SME) by providing technical training on new equipment and operational procedures to the wider site team.

Requirements
  • Education: Bachelor's degree in Engineering (Mechanical, Chemical, or Bioengineering preferred).
  • Experience: 5-9 years of directly relevant experience in the biotech, pharmaceutical, or gene therapy space.
  • Technical Knowledge: Proven expertise in facility, process, or manufacturing engineering. Single-use technology and viral vector manufacturing experience is highly preferred.
  • Regulatory Fluency: Deep understanding of cGMP systems and FDA/EU regulations.
  • Operational Flexibility: Ability to provide on-call or in-person support for batch processing operations.
  • Soft Skills: Strong troubleshooting, organizational, and interpersonal skills. Must be a proactive team player.
  • Travel: Ability to travel up to 10% for vendor visits or headquarters requirements.

Benefits
  • Health Care Plan (Medical, Dental & Vision)
  • Retirement Plan (401k)
  • Life Insurance (Basic, Voluntary & AD&D)
  • Paid Time Off (Vacation, Sick & Public Holidays)
  • Family Leave: (Maternity, Paternity)
  • Short Term & Long Term Disability
  • Training & Development
  • Stocked micro-kitchen with drinks and snacks
  • Wellness Resources

About Encoded Therapeutics Inc.

Encoded Therapeutics is a biotechnology company developing precision gene therapies for a broad range of severe genetic disorders. The company's mission is to unlock new opportunities for viral gene therapy and gene editing, and to develop new technologies to overcome the current limitations of gene therapy. Encoded's lead program is focused on Dravet syndrome, a rare and severe form of epilepsy that begins in infancy. The company is also developing gene therapies for other neurological and metabolic disorders, including Tay-Sachs disease, Gaucher disease, and Wilson disease. Encoded was founded in 2014 and is headquartered in South San Francisco, California.
Learn more about Encoded Therapeutics Inc.
Size
50 employees
Industry
Net Income
-$28
Founded
2014
NASDAQ

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