Director, Program and Portfolio Management

Septerna

$230K — $255K *
Pharmaceuticals & Biotech
8 - 10 years of experience
Job Overview by Ladders

Qualifications

  • Advanced degree in drug discovery/development; Ph.D./PharmD/MBA preferred
  • 10-15+ years in Biotech or Pharma, with project management experience in clinical development
  • Expertise in project planning and risk management; knowledge of drug development processes
  • Proven track record in small molecule discovery, clinical trial management, and strategy development
  • Experience with project management tools like Smartsheet
  • Ability to navigate a matrix environment and manage complex stakeholder relationships
  • Strong organizational and communication skills; attention to detail is crucial

Responsibilities

  • Lead program management for development programs from preclinical to clinical stages
  • Define program strategy with cross-functional teams and translate it into actionable plans
  • Identify and manage program-level risks and lead mitigation discussions
  • Prepare presentations for various internal and external meetings
  • Develop and maintain integrated program plans with milestones and budgets
  • Monitor program progress and implement strategies for deviations
  • Communicate program status and risks to stakeholders clearly and consistently

Benefits

  • Stock options
  • Annual target bonus
  • Collaborative team-oriented environment
  • Opportunities for professional development and capability building
Full Job Description
POSITION SUMMARY:

THE ROLE

We are seeking an experienced Director of Program Management to join our dynamic team. This role will be critical in driving programs from discovery and development candidate nomination through clinical development, ensuring high-quality, decision-ready execution across research, preclinical, regulatory, and clinical functions.

In this role, you will provide end-to-end program management leadership, serving as the operational owner for assigned programs. You will be accountable for integrated program plans, timelines, risk management, and governance, and will partner closely with scientific and development leaders to align execution with company strategy. As the point of contact for program execution, you will proactively manage risks, facilitate trade-off discussions, and enable informed decision-making at both the team and executive levels.

This position reports to the Vice President of Program and Portfolio Management and is a full-time, onsite position requiring in-person collaboration with cross-functional teams.

KEY RESPONSIBILITIES

Program Management and Coordination
  • Lead program management for one or more development programs from preclinical development through clinical stages
  • Partner with the cross-functional Program Team to define program strategy, conduct scenario planning, and translate strategy into executable plans to achieve program objectives
  • Identify and manage program-level risks, assumptions, and interdependencies; lead mitigation planning and issue resolution
  • Escalate risks and decision points with clear options and recommendations
  • Work with teams to prepare presentations for internal and external meetings (e.g., team presentations, abstracts, posters, management review, Board of Directors meetings)
  • Coordinate cross-functional document production such as protocols, IB, and Regulatory submissions to Health Authorities (e.g. IND, CTA, NDA).

Strategic & Operational Planning
  • Develop and maintain integrated program plans, including milestones, timelines, budgets, and resource assumptions
  • Monitor progress against plans, identify deviations, and implement mitigation strategies or alternative scenarios
  • Conduct critical path and dependency analyses to proactively identify risks and bottlenecks

Communication & Stakeholder Management
  • Ensure clear, consistent, and transparent communication of program status, key risks, and upcoming milestones through minutes, action items and decision tracking.
  • Align diverse stakeholders around priorities, decisions, and execution plans in a matrixed environment

Process Excellence & Capability Building
  • Contribute to the design, implementation, and continuous improvement of program management processes, tools, and templates
  • Promote best practices in program planning, governance, and execution across the organization

ABOUT YOU
  • Advanced degree relevant to drug discovery/development; Ph.D./ PharmD/MBA preferred
  • Minimum of at least 10-15+ years of experience within the Biotech or Pharma industry; prior experience in project management required, specifically in the clinical development space
  • Proven expertise in project planning, execution, and risk management, with a deep understanding of drug development processes, particularly in endocrinology, immunology, CNS
  • Demonstrated track record of managing small molecule discovery projects from early research through development candidates and IND/CTA submissions, clinical trial management, and program strategy development
  • Experience with commonly used project management tools, including Smartsheet
  • Ability to execute diverse and novel strategies in a matrix environment; experience managing and influencing complex issues and a variety of key stakeholders
  • Demonstrated skill in driving execution and focusing on deliverables
  • Strong organizational skills, persistent attention to detail, and ability to work independently and collaboratively to manage timelines and priorities
  • Ability to manage complex situations and adapt to changing business needs by prioritizing multiple tasks
  • Strong interpersonal and communication skills. Demonstrated ability to collaborate closely with individual project leads/teams and scientific leadership
  • Desire to work on a small team in a fast-paced environment

The anticipated salary range for candidates who will work in South San Francisco, CA is $230,000 - $255,000. Individual pay may vary based on additional factors, including, and without limitation, job-related skills, experience, work location and relevant education or training. Septerna's compensation package also includes benefits, stock options, and annual target bonus for full-time positions.

Note to Employment Agencies: Please do not forward any agency resumes. The company will not be responsible for any fees related to resumes that are unsolicited.

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