Research Scientist, Virtual Cell Modelling & Perturbative Biology Foundation Models

Valence Labs

$120K — $150K *
US-AnywhereRemote in Montreal, QC
Pharmaceuticals & Biotech
Less than 5 years of experience
Job Overview by Ladders

Qualifications

  • PhD or equivalent in machine learning, drug discovery, life sciences, or related fields.
  • Strong experience in generative modeling and representation learning applied to high-dimensional data.
  • Scientific knowledge in biology or chemistry, with exposure to experimental paradigms like genetic screens.
  • Proven research track record in developing ML models for complex data, especially in life sciences.
  • Technical skills in rapidly prototyping and scaling ML models, with Python proficiency.

Responsibilities

  • Research and develop generative models to predict cellular responses.
  • Build and maintain ML systems for processing high-dimensional omics datasets.
  • Collaborate to ensure predictions are interpretable and grounded in real outcomes.
  • Design and implement evaluation metrics to test generalization in real-world conditions.
  • Publish research findings in top-tier scientific venues and engage in open scientific practices.

Benefits

  • Comprehensive health benefits package.
  • Eligibility for annual bonuses and equity compensation.
  • Opportunity for hybrid work arrangements in a collaborative office environment.
Full Job Description
About The Role

You will be joining a research program building multimodal foundation models to predict cellular responses to chemical and genetic perturbations across petabyte-scale omics and imaging data. The work spans generative and distributional modeling, representation learning for molecules and genes/proteins, and the design of biologically grounded evaluation frameworks. The goal is to close critical gaps in the pre-clinical pipeline, replacing or augmenting wet-lab perturbation screens with in silico predictions that are reliable enough to drive drug discovery decisions. We are seeking a Research Scientist with strong ML research and engineering skills, and genuine curiosity for biology, to join a multidisciplinary team of ML researchers, engineers, and computational biologists working toward a shared goal: building virtual cells that transform how medicines are discovered.
Key Responsibilities
  • Generative Modeling: Research and develop generative and distributional models (e.g., flow matching, diffusion models) to predict high-dimensional cellular responses.
  • Scalable ML Engineering: Build and maintain ML systems capable of processing massive multiomics datasets on high-performance compute clusters.
  • Biological Grounding: Work closely with colleagues to ensure model predictions are interpretable, trustworthy, actionable, and grounded in real experimental outcomes.
  • Evaluation Frameworks: Help design and implement rigorous evaluation metrics that test generalization across for cellular context, unseen perturbations and covariates, going beyond IID performance to reflect real deployment conditions.
  • Open Science & Collaboration: Publish findings in top-tier venues (e.g., NeurIPS, ICML, Nature, Science, Cell) and contribute to the broader scientific community.
What We're Looking For

We prioritize scientific depth in both ML and biology, but will consider exceptional ML candidates willing to develop biological expertise on the job. A successful candidate will have most of the following:
  • PhD (or equivalent) with significant academic or industry research experience in machine learning applied to drug discovery, life sciences or other real-world scientific or engineering problems.
  • Strong background in generative modeling and representation learning, with experience applying these to high-dimensional scientific data (e.g., images, count matrices, graphs); experience with biological data is a plus.
  • Scientific knowledge of biology or chemistry, with familiarity with perturbational / interventional experimental paradigms (e.g., chemical or genetic screens, transcriptomics, high-content imaging).
  • Impactful research track record, including developing ML models for complex real-world data, proposing new training or evaluation approaches, or applying generative methods to scientific problems, particularly in biology or life sciences.
  • Strong technical and engineering skills, including the ability to rapidly prototype and scale ML models, manage large codebases, and maintain reproducible research pipelines; Python proficiency required, experience with compiled languages a plus.
  • Cross-functional comfort, with the ability to work effectively across disciplines (e.g with dry and wet-lab scientists) to ensure models address real scientific questions.
  • Leadership and communication skills: including an authorship record in peer-reviewed conferences (e.g., NeurIPS, ICML, ICLR) or journals (e.g., Nature, Science, Cell).

Working Location & Compensation:

This is an office-based, hybrid position at either of our offices located in Montreal, Quebec, Canada. Employees are expected to work in the office at least 50% of the time.

Compensation packages are competitive and commensurate with the skills and level of experience required for this role. In addition to base salary you will also be eligible for an annual bonus and equity compensation, as well as a comprehensive benefits package.

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