Principal Data Scientist

InterVenn Biosciences

$130K — $180K *
Pharmaceuticals & Biotech
5 - 7 years of experience
Job Overview by Ladders

Qualifications

  • Ph.D. in a relevant quantitative field or MS with substantial experience
  • 6+ years of experience with predictive models on biological data
  • Proven methodological innovation through impactful publications or open-source contributions
  • Expertise in Python/R and a modern ML stack (scikit-learn, PyTorch/TensorFlow)
  • Strong grasp of statistical principles, including cross-validation and uncertainty quantification
  • Hands-on experience with high-dimensional biological data classifiers
  • Experience with batch-effect correction and normalization techniques

Responsibilities

  • Design and prototype new classifier architectures for clinical diagnostics
  • Lead research on quantification and normalization for glycoproteomic data
  • Utilize a diverse toolkit of statistical and AI methods for problem-solving
  • Develop strategies for cross-validation and managing uncertainties
  • Investigate model generalization across different clinical cohorts
  • Synthesize information across disease indications and mitigate noise in data
  • Build multimodal models incorporating diverse data types
  • Mentor junior data scientists and enhance team methodologies

Benefits

  • Flexible working hours
  • Opportunities for continuous learning and professional development
  • Collaborative and innovative work environment
  • Impact-driven projects with real-world applications in healthcare
  • Potential for career advancement within the organization
Full Job Description
We are seeking a creative, methodologically rigorous Senior Data Scientist to push the frontier of how we research and build classifiers from glycoproteomic data. This is a research-forward individual contributor role for someone who reaches across the full breadth of modern statistical and AI methods - classical ML, deep learning, foundation models for biology, generative approaches, and whatever the literature surfaces next - and is energized by open problems: new quantification and normalization schemes, novel feature engineering, multimodal model architectures, and the biological interpretation of model outputs.

RESPONSIBILITIES
  • Design, prototype, and rigorously evaluate novel classifier architectures for clinical diagnostics across oncology indications
  • Lead exploratory research into new quantification, normalization, and feature engineering methods for high-dimensional glycoproteomic data
  • Bring a diverse modeling toolkit - classical statistical methods, tree-based ensembles, deep learning, probabilistic and Bayesian approaches, foundation models, graph neural networks, and generative AI - and choose the right tool for the problem based on evidence rather than habit or hype
  • Develop cross-validation, calibration, and uncertainty-quantification strategies that hold up to the realities of small clinical cohorts and high feature counts
  • Investigate and mitigate batch, cohort, and site effects so that models generalize from discovery to bridging to locked panels
  • Drive cross-indication synthesis - separate shared disease biology from indication-conditioned signal, and from nonspecific inflammatory or acute-phase axes
  • Build multimodal models that combine glycan/motif information, proteomic grounding, and clinical covariates rather than relying on protein-quantity signal alone
  • Translate emerging techniques from the ML, AI, and computational-biology literature into production-ready methods
  • Mentor junior data scientists and raise the methodological bar across the team


QUALIFICATIONS
  • Ph.D. in Statistics, Computer Science, Computational Biology, Bioinformatics, or a related quantitative field, plus 6+ years of experience building predictive models on biological data in industry or academia; alternatively, an MS in a similar field with 8+ years of relevant experience
  • Demonstrated track record of methodological innovation - first-author publications, novel methods deployed in production, open-source contributions, or comparable evidence of original work
  • Deep proficiency in Python and/or R, including the modern ML stack (scikit-learn, PyTorch or TensorFlow, XGBoost/LightGBM, and similar)
  • Methodological breadth across paradigms - comfortable moving between classical statistics, tree-based ML, deep learning, and modern AI (transformers, graph neural networks, foundation models, generative methods) - and the judgment to argue rigorously for one approach over another
  • Strong statistical foundation: cross-validation strategy, regularization, calibration, uncertainty quantification, and handling of confounders and class imbalance
  • Hands-on experience building and validating classifiers on high-dimensional, low-sample-size biological data (proteomics, glycoproteomics, transcriptomics, or genomics)
  • Experience with batch-effect correction and normalization techniques, and a healthy skepticism about how those choices propagate into downstream performance estimates
  • Preference will be given to candidates with experience in multimodal modeling, interpretability methods, or foundation/representation-learning approaches for biological data
  • Prior experience in the clinical diagnostics industry with a solid understanding of analytical and clinical validation, locking classifiers, and bridging studies.
  • Excellent written and verbal communication: able to explain novel methods clearly to wet-lab scientists, clinicians, and fellow statisticians alike
  • A genuine desire to impact patient lives and contribute to the broader scientific community

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