Genomics Software Engineer 2

Providence Healthcare   •  

Portland, OR

Industry: Healthcare

  •  

Less than 5 years

Posted 35 days ago

Providence is calling a full-time Software Engineer 2 to the Molecular Genomics Lab at the Providence Office Park in Portland, OR.

In this position, you will:

  • Be responsible for the development and maintenance of cutting-edge web-based tools in support of our Clinical Cancer Genomics program, including opportunities for full stack development, with an emphasis on user experience design and front end development.
  • Be required for full lifecycle development and testing of software systems, with a focus on robustness and scalability, new feature design, development and deployment.
  • Integrate into a team engaged in computational biology activity ranging from storing, analyzing, visualizing and interpreting large-scale genomic data derived from advanced molecular genomic techniques including Next-Generation Sequencing (NGS).
  • Directly support clinical laboratory personnel and clinicians in the Providence Molecular Genomics Lab, a high capacity clinical genomic lab supporting both clinical and research efforts.
  • Although the emphasis is on full stack software development, significant experience with genomics datasets as well as formal bioinformatic training are a requirement for the position.

Required qualifications for this position include:

  • Bachelor of Science degree or higher in a Software Engineering related field including computer science, computer engineering or information technology
  • 3+ years professional experience in software engineering
  • Significant Web Application Development expertise
  • Web Application Development
  • Experience with Linux/Unix environments
  • Fluent with multiple languages, including Ruby, Javascript, Python
  • Fluent with Rails and/or Sinatra based web development
  • Familiar with the Active Record Object Relational Mapping
  • Experience with Rails and/or Sinatra based web development
  • Experience with Git & GitHub
  • Demonstrated history of applying best practices in software development, including use of code repositories, version control, data and analysis provenance, containers, testing frameworks, continuous integration, and documentation
  • Experience building and integrating back-end web services (using JSON, AJAX, REST) and interfacing with databases

Preferred qualifications for this position include:

  • Formal Bioinformatic training strongly preferred
  • Experience with cloud technologies
  • Experience with Docker/Container based technologies
  • Experience with MongoDB
  • Experience with scalable distributed computing systems

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